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Citing CMDGA
Clear Filters
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
913
accessible chromatin
817
binding sites
683
gene expression
169
eQTL
167
differential activity
140
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Annotation Category
4
Genetic variant effects
2
Others
Annotation type Category
3
quantitative proteomics
1
ChIP-seq
Available data
4
bed bed3+
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
2
cartilage tissue
1
Pancreatic islets
1
cerebrospinal fluid
1
naive thymus-derived CD4-positive, alpha-beta T cell
Organ
2
connective tissue
1
bodily fluid
Life stage
4
adult
Date released
3
August, 2021
1
May, 2020
1
May, 2021
1
November, 2019
Software used
2
fastqtl
2
peer
1
limix
1
macs
1
r
Lab
2
AMP-T2D consortium
2
ITG
2
Kyle Gaulton, UCSD
Project
4
AMP
2
ITG
RFA
4
AMP
2
ITG
software_used.software.name!
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Showing 6 of 6 results
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Download
FileSet
DSR561OLH
released
Annotation file set
: pQTLs from CSF levels of 1,126 proteins in 133 subjects by performing a genome-wide association analysis of 514,227 SNPs
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR524ZAH
released
Annotation file set
: pQTL of low-grade (intact; preserved) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR651XSZ
released
Annotation file set
: pQTL of high grade (highly degraded; lesioned) cartilage tissue from 115 patients undergoing joint replacement for osteoarthritis.
Lab:
ITG
Project:
ITG
FileSet
DSR801ZQH
released
Annotation file set
: histone quantitative trait loci (hQTL) from H3K27ac ChIP-seq of BLUEPRINT epigenome project of human immune cell types (naive CD4+ T cells) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048FDK
released
Annotation file set
: Test annotation
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR942GKV
released
Annotation file set
: Annotation for gene TSS
Lab:
Kyle Gaulton, UCSD
Project:
AMP