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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
binding sites
3
histone modifications
1
chromatin state
Annotation Category
8
cis-regulatory elements
Annotation type Category
11
ChIP-seq
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
125
monocyte
55
HeLa-S3
50
H1-hESC
42
neural progenitor cell
41
CD8-positive, alpha-beta T cell
40
endothelial cell
35
islet of Langerhans
34
kidney
30
fibroblast
28
heart
28
hepatocyte
27
retina
26
K562
26
liver
23
EndoC_BH1
23
brain
23
macrophage
23
pancreatic ductal cell
21
A549
21
smooth muscle cell
21
stomach
20
breast cancer cell
20
pericyte cell
20
pigmented layer of retina
19
B cell
19
HFFc6
18
embryonic stem cell
18
epithelial cell of proximal tubule
18
lung
18
pancreatic beta cell
18
subcutaneous adipose tissue
17
pancreatic alpha cell
17
placenta
16
adipocyte
16
adipose tissue
16
endothelial cell of hepatic sinusoid
16
pancreatic acinar cell
16
regulatory T cell
16
small intestine
15
adrenal gland
15
glomerular endothelial cell
15
induced pluripotent stem cell
15
keratinocyte
15
muscle of arm
15
muscle of leg
15
pancreatic delta cell
14
thymus
13
T cell
13
astrocyte
13
excitatory neuron
13
heart left ventricle
13
large intestine
13
muscle of back
12
HepG2
12
common myeloid progenitor, CD34-positive
12
coronary artery
12
hematopoietic multipotent progenitor cell
12
left lung
12
neuroblastoma cell
11
GM12878
11
T-helper 17 cell
10
T-helper 1 cell
10
gastric cancer cell
10
natural killer cell
10
pancreatic stellate cell
10
progenitor cell of endocrine pancreas
10
right lung
10
skeletal muscle satellite cell
10
tibial nerve
9
CD4-positive, alpha-beta memory T cell
9
MCF-7
9
Rhabdomyosarcoma
9
cardiomyocytes
9
diffuse intrinsic pontine glioma
9
erythroblast
9
liposarcoma
9
mesenchymal stem cell
9
omental fat pad
9
osteoblast
9
retinal pigment epithelial cell
9
right atrium auricular region
9
spinal cord
9
tibial artery
8
B-lymphoblastoid cell line
8
caudate nucleus
8
fibroblast cell line
8
frontal cortex
8
renal pelvis
8
right kidney
8
skeletal muscle fiber
8
spleen
7
Ammon's horn
7
CD4-positive, alpha-beta T cell
7
CD8-positive, alpha-beta memory T cell
7
H9
7
aorta
7
ascending aorta
7
body of pancreas
7
cardiac muscle cell
7
cardiomyocytes (cardiac muscle cell)
7
cerebellum
7
endothelial cell of umbilical vein
7
esophageal adenocarcinoma
7
extended pluripotent stem (EPS) cells
7
fibroblast of cardiac tissue
7
glomerular visceral epithelial cell
7
left kidney
7
lymphocyte
7
mammary gland epithelial cell
7
mature neutrophil
7
memory B cell
7
substantia nigra
7
temporal lobe
6
Chondroid Chordoma
6
amygdala
6
cardiac precursors (cardiac muscle cell)
6
chondrocyte
6
colon epithelial cell
6
hESC cell
6
hypothalamus
6
left cardiac atrium
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
neuroblastoma cell line
6
neutrophil
6
pancreas
6
plasma cell
6
renal cortex interstitium
6
skeletal muscle myoblast
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
C1 segment of cervical spinal cord
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
CyT49
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Ewing sarcoma
5
Fibroblast
5
GM19238
5
GM19239
5
GM19240
5
Glomerular Capillary Endothelial Cell
5
HUES8
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
Medullary Thick Ascending Limb Cell
5
Monocyte
5
Myofibroblast
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
T-helper 2 cell
5
enterocyte
5
foreskin fibroblast
5
glutamatergic neuron
5
heart right ventricle
5
kidney interstitial cell
5
kidney loop of Henle thin ascending limb epithelial cell
5
mammary epithelial cell
5
mast cell
5
mesangial cell
5
osteosarcoma
5
prostate cancer cell line
5
prostate gland
5
psoas muscle
5
skeletal muscle tissue
5
smooth muscle cell of the coronary artery
5
testis
5
type I muscle cell
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
BE(2)-C
Organ
5
epithelium
5
mammary gland
Date released
6
February, 2021
1
August, 2017
1
October, 2022
Software used
6
macs
2
chromhmm
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
8
AMP
software_used.software.name!
qTLtools
annotation_type_category!
DNase-seq
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR707PUV
released
Annotation file set
: Binding sites annotation for mammary epithelial cell (HMEC) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR931TSF
released
Annotation file set
: Histone modifications annotation for Breast Mammary_epithelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR587QBR
released
Annotation file set
: Histone modifications annotation for Breast HMLE from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YJP
released
Annotation file set
: Histone modifications annotation for Breast HMEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR374KTP
released
Annotation file set
: Binding sites annotation for Breast Mammary_epithelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR704WVL
released
Annotation file set
: Binding sites annotation for Breast HMLE from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR429QEJ
released
Annotation file set
: Binding sites annotation for Breast HMEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR538274
released
Annotation file set
: ChromHMM 13-state model for HMEC
Lab:
Stephen Parker, UMich
Project:
AMP