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Citing CMDGA
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Annotation type
2
target gene predictions
Annotation Category
2
Target gene links
Annotation type Category
Capture-C
1
HiC
1
pCHi-C
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
primary cell
Biosample term
1
adult endothelial progenitor cell
1
white adipose cell
Organ
2
connective tissue
1
adipose tissue
1
bone element
1
bone marrow
1
liver
1
pancreas
1
thymus
Date released
1
March, 2020
1
May, 2020
Software used
135
r
130
macs
59
chromhmm
40
encode-ccres
31
abc
16
deltasvm
9
qTLtools
8
deseq2
5
fastqtl
4
peer
2
chicago
2
deeptools
2
gtex_eqtl:V8
2
gtex_finemapping_eQTL:caveman
2
gtex_finemapping_eQTL:caviar
2
gtex_finemapping_eQTL:dapg
2
mach2qtl
2
nospecificsoft_customcode
2
rasqual
2
samtools
2
umitools
1
cicero
1
eigenmt
1
emmax
1
epacts
1
fast-lmm
1
matrix-eQTL
1
probabel
1
seurat
1
unknown
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
Capture-C
Showing 2 of 2 results
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Download
FileSet
DSR284RGT
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of adult endothelial progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR355DOK
released
Annotation file set
: A target gene prediction annotation in white adipose cell of TSTSR423QSN pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP