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Citing CMDGA
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Embeddings type
3
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
10X scRNA-seq
28
Smart-seq
2
10X snRNA-seq
1
10X scATAC-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
7
h5ad
4
mtx
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
islet of Langerhans
2
lung
1
heart
Tissue term
2
lung
2
pancreas
1
heart
Organ
2
lung
2
pancreas
Date released
2
September, 2021
1
February, 2021
1
March, 2024
1
September, 2020
Lab
2
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
1
AMP-T2D consortium
Project
3
AMP
2
LungMap
T1D
RFA
3
AMP
2
LungMap2
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T1D
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ENCODE3
files.file_type!
tsv
embeddings_underlying_assay!
10X scRNA-seq
Showing 5 of 5 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP