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Citing CMDGA
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Embeddings type
Gene expression
4
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
2
sciATAC-seq
1
10X scATAC-seq
1
10X snATAC-seq
Available data
3
h5ad
2
mtx
2
tsv
1
rds
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
carotid canal
1
skeletal muscle tissue
1
tissues
Tissue term
2
pancreas
1
skeletal muscle tissue
1
tissues
Organ
2
pancreas
1
musculature of body
Date released
1
February, 2021
1
March, 2024
1
May, 2022
1
November, 2021
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
LungMap
T1D
RFA
3
AMP
1
ENCODE3
award.project!
T1D
LungMap
embeddings_type!
Gene expression
biosample_term_name!
carotid canal
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP