Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Gene expression
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
5
umap
Underlying Assay
10X scRNA-seq
27
Smart-seq
3
10X snRNA-seq
10X snATAC-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
4
h5ad
2
mtx
2
tsv
1
rds
File set status
5
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
heart
2
islet of Langerhans
1
skeletal muscle tissue
Tissue term
2
heart
2
pancreas
1
skeletal muscle tissue
Organ
2
pancreas
1
heart
1
musculature of body
Life stage
1
adult
Date released
1
February, 2021
1
February, 2023
1
March, 2024
1
May, 2022
1
September, 2020
Lab
3
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
1
ENCODE3
1
LungMap2
tissue_term_name!
lymph node
embeddings_underlying_assay!
10X scRNA-seq
10X snATAC-seq
Showing 5 of 5 results
table-tab-icon
matrix-icon
FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP