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Schema
Citing CMDGA
Clear Filters
Embeddings type
3
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
1
10X scATAC-seq
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
2
tsv
1
rds
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
3
heart
3
lung
2
islet of Langerhans
2
kidney
2
pancreas
2
skeletal muscle tissue
1
bladder organ
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
immune system
1
large intestine
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Tissue term
4
pancreas
blood
2
skeletal muscle tissue
Organ
2
musculature of body
2
pancreas
Date released
2
May, 2022
1
February, 2021
1
March, 2024
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
RFA
4
AMP
tissue_term_name!
blood
Showing 4 of 4 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP