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Citing CMDGA
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Embeddings type
3
Accessible chromatin
Gene expression
Embeddings Category
3
umap
Underlying Assay
2
10X snATAC-seq
1
sciATAC-seq
Available data
3
h5ad
2
mtx
2
tsv
File set status
3
released
Organism
2
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
3
islet of Langerhans
1
carotid canal
1
lung
1
pancreas
1
peripheral blood mononuclear cell
1
skeletal muscle tissue
1
tissues
Tissue term
1
blood
1
pancreas
1
skeletal muscle tissue
1
tissues
Organ
1
blood
1
bodily fluid
1
musculature of body
1
pancreas
Date released
1
August, 2021
1
May, 2022
1
November, 2021
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
1
T1D
RFA
1
AMP
1
ENCODE3
1
T1D
embeddings_type!
Gene expression
Showing 3 of 3 results
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D