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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
2
Gene expression
Cohort
1
HPAP
Embeddings Category
4
umap
Underlying Assay
10X scRNA-seq
2
10X snRNA-seq
1
10X scATAC-seq
1
sciATAC-seq
Available data
3
h5ad
1
mtx
1
rds
1
tsv
File set status
4
released
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
2
heart
2
islet of Langerhans
Tissue term
2
heart
2
pancreas
Organ
2
pancreas
1
heart
Life stage
1
adult
Date released
May, 2022
1
February, 2021
1
February, 2023
1
March, 2024
1
September, 2020
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Project
4
AMP
2
LungMap
1
ENCODE
1
T1D
RFA
4
AMP
embeddings_underlying_assay!
10X scRNA-seq
month_released!
May, 2022
Showing 4 of 4 results
table-tab-icon
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP