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Citing CMDGA
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Embeddings type
2
Accessible chromatin
Embeddings Category
2
umap
Underlying Assay
1
10X snATAC-seq
10X snRNA-seq
1
sciATAC-seq
Available data
2
h5ad
2
mtx
2
tsv
File set status
2
released
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
1
skeletal muscle tissue
1
tissues
Tissue term
6
pancreas
3
blood
2
kidney
2
lung
1
bone marrow
1
carotid canal
1
cell
1
endothelial cell
1
epithelial cell
1
eye
1
fat pad
1
heart
1
large intestine
1
leukocyte
1
liver
1
lymph node
1
major salivary gland
1
mammary gland
1
muscle organ
1
prostate gland
1
skeletal muscle tissue
1
skin of body
1
small intestine
1
spleen
1
stromal cell
1
thymus
1
tissues
1
tongue
1
trachea
1
uterus
1
vasculature
Organ
1
musculature of body
Date released
1
May, 2022
1
November, 2021
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
embeddings_underlying_assay!
10X snRNA-seq
biosample_term_name!
bladder organ
Showing 2 of 2 results
table-tab-icon
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE