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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
10X scRNA-seq
26
Smart-seq
1
10X scATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
6
h5ad
mtx
5
tsv
1
bed bed3
1
cloupe
1
rds
1
tbi
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
islet of Langerhans
1
heart
Tissue term
3
pancreas
blood
1
heart
Organ
lung
2
pancreas
Date released
1
February, 2021
1
March, 2024
1
September, 2020
Lab
2
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
files.file_type!
mtx
tissue_term_name!
blood
organ_slims!
lung
embeddings_underlying_assay!
10X scRNA-seq
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP