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Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
2
umap
Underlying Assay
1
10X scATAC-seq
1
10X snATAC-seq
sciATAC-seq
Available data
1
h5ad
1
rds
File set status
2
released
Organism
2
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
2
islet of Langerhans
1
lung
1
pancreas
1
peripheral blood mononuclear cell
Tissue term
2
pancreas
1
blood
Organ
2
pancreas
1
blood
1
bodily fluid
Date released
1
August, 2021
1
March, 2024
Lab
2
Kyle Gaulton, UCSD
Project
1
AMP
1
T1D
RFA
1
AMP
1
T1D
files.file_type!
tsv
embeddings_underlying_assay!
sciATAC-seq
Showing 2 of 2 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D