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Citing CMDGA
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Embeddings type
1
Accessible chromatin
1
Gene expression
Embeddings Category
2
umap
Underlying Assay
1
10X scRNA-seq
1
sciATAC-seq
Available data
2
h5ad
1
mtx
1
tsv
File set status
2
released
Organism
Homo sapiens
Biosample type
1
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
pancreas
1
peripheral blood mononuclear cell
1
tissues
Tissue term
1
blood
1
pancreas
1
tissues
Organ
1
blood
1
bodily fluid
1
pancreas
Date released
1
August, 2021
1
November, 2021
Lab
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
ENCODE
1
T1D
RFA
1
ENCODE3
1
T1D
organ_slims!
prostate gland
award.project!
AMP
organism.scientific_name!
Homo sapiens
Showing 2 of 2 results
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FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D