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Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
2
umap
Underlying Assay
1
10X snATAC-seq
1
sciATAC-seq
Available data
5
h5ad
3
mtx
3
tsv
1
bed bed3
1
cloupe
1
rds
tbi
File set status
2
released
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
1
skeletal muscle tissue
1
tissues
Tissue term
1
skeletal muscle tissue
1
tissues
Organ
1
musculature of body
Date released
1
May, 2022
1
November, 2021
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
files.file_type!
tbi
Showing 2 of 2 results
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FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE