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Citing CMDGA
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Embeddings type
5
Gene expression
3
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
1
10X scATAC-seq
1
10X snATAC-seq
1
sciATAC-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
3
islet of Langerhans
1
lung
1
pancreas
peripheral blood mononuclear cell
Tissue term
2
pancreas
1
lung
Organ
2
pancreas
1
lung
Date released
1
February, 2021
1
March, 2024
May, 2022
1
September, 2021
Lab
2
Kyle Gaulton, UCSD
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
LungMap
RFA
2
AMP
1
LungMap2
lab.title!
Bing Ren, UCSD
biosample_term_name!
peripheral blood mononuclear cell
skeletal muscle tissue
month_released!
May, 2022
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP