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Citing CMDGA
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Embeddings type
2
Accessible chromatin
2
Gene expression
Embeddings Category
4
umap
Underlying Assay
1
10X scRNA-seq
1
10X snATAC-seq
1
10X snRNA-seq
1
sciATAC-seq
Available data
4
h5ad
1
mtx
1
rds
1
tsv
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
heart
2
lung
1
kidney
1
tissues
Tissue term
pancreas
2
blood
2
lung
1
kidney
1
tissues
Organ
2
lung
1
kidney
Life stage
1
adult
Date released
May, 2022
2
September, 2021
1
November, 2021
1
September, 2023
Lab
2
Xin Sun, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
2
LungMap
1
AMP
1
ENCODE
RFA
2
LungMap2
1
AMP
1
ENCODE3
month_released!
May, 2022
tissue_term_name!
pancreas
biosample_term_name!
heart
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap