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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Gene expression
1
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
4
10X snATAC-seq
2
10X scRNA-seq
2
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
2
h5ad
1
mtx
1
rds
1
tsv
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
1
islet of Langerhans
1
lung
1
skeletal muscle tissue
Tissue term
1
lung
1
pancreas
1
skeletal muscle tissue
Organ
1
lung
1
musculature of body
1
pancreas
Life stage
adult
Date released
1
March, 2024
1
May, 2022
September, 2020
1
September, 2021
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
LungMap
RFA
2
AMP
1
LungMap2
month_released!
September, 2020
relevant_life_stage!
adult
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap