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Schema
Citing CMDGA
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Embeddings type
Gene expression
3
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
2
10X snATAC-seq
sciATAC-seq
1
10X scATAC-seq
Available data
2
h5ad
1
mtx
1
rds
1
tsv
File set status
3
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
1
islet of Langerhans
1
lung
1
skeletal muscle tissue
Tissue term
carotid canal
1
lung
1
pancreas
1
skeletal muscle tissue
Organ
2
pancreas
blood
1
bodily fluid
1
lung
1
musculature of body
Date released
1
March, 2024
1
May, 2022
1
September, 2021
Lab
1
AMP-T2D consortium
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
2
AMP
1
LungMap
RFA
2
AMP
1
LungMap2
organ_slims!
blood
embeddings_type!
Gene expression
embeddings_underlying_assay!
sciATAC-seq
tissue_term_name!
carotid canal
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR384UWH
released
Embeddings file set
: Clustering of snATAC-seq accessible chromatin profiles from 4,926 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722OVR
released
Embeddings file set
: snATAC-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap