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Schema
Citing CMDGA
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Embeddings type
2
Accessible chromatin
1
Gene expression
Cohort
1
HPAP
Embeddings Category
3
umap
Underlying Assay
1
10X scATAC-seq
1
10X scRNA-seq
1
10X snATAC-seq
Available data
2
h5ad
1
rds
File set status
3
released
Organism
2
Homo sapiens
Biosample type
3
tissue
2
primary cell
Biosample term
3
islet of Langerhans
2
pancreas
2
peripheral blood mononuclear cell
Tissue term
3
pancreas
2
blood
Organ
3
pancreas
2
blood
2
bodily fluid
Date released
2
August, 2021
February, 2021
1
March, 2024
Software used
r
Lab
34
AMP-T2D consortium
3
Kyle Gaulton, UCSD
2
Xin Sun, UCSD
1
Bing Ren, UCSD
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
tissue_term_name!
eye
month_released!
February, 2021
software_used.software.name!
r
Showing 3 of 3 results
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR675TJW
released
Embeddings file set
: Clustering of scRNA-seq profiles from 90,495 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR047LET
released
Embeddings file set
: Clustering of accessible chromatin profiles from 131,554 cells from single cell experiments of peripheral blood mononuclear cells, whole pancreas tissue, and purified pancreatic islets
Lab:
Kyle Gaulton, UCSD
Project:
T1D