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Schema
Citing CMDGA
Clear Filters
Embeddings type
2
Accessible chromatin
Cohort
1
HPAP
Embeddings Category
2
umap
Underlying Assay
1
10X scATAC-seq
1
sciATAC-seq
Available data
1
h5ad
1
mtx
1
rds
1
tsv
File set status
2
released
Organism
1
Homo sapiens
Biosample type
1
tissue
Biosample term
1
islet of Langerhans
1
tissues
Tissue term
1
pancreas
1
tissues
Organ
1
pancreas
Date released
31
May, 2022
2
August, 2021
2
September, 2021
1
February, 2021
1
February, 2023
1
March, 2023
1
March, 2024
1
November, 2021
1
September, 2020
1
September, 2023
Lab
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
tissue_term_name!
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FileSet
DSR827MAZ
released
Embeddings file set
: Reference map of islet cell type-specific chromatin accessibility from 97,659 cells derived from single cell ATAC-seq assays of 41 non-diabetic, T1D autoantibody positive (Aab+), T1D, and T2D donors from the Human Pancreas Analysis Program
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE