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Embeddings type
3
Gene expression
1
Accessible chromatin
Embeddings Category
4
umap
Underlying Assay
2
10X snRNA-seq
1
10X scRNA-seq
1
sciATAC-seq
Available data
4
h5ad
2
mtx
2
tsv
1
rds
File set status
4
released
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
2
heart
1
kidney
1
tissues
Tissue term
2
heart
lung
1
kidney
1
tissues
Organ
1
heart
1
kidney
Life stage
2
adult
Date released
May, 2022
1
February, 2023
1
November, 2021
1
September, 2020
1
September, 2023
Lab
Kyle Gaulton, UCSD
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
tissue_term_name!
lung
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2022
Showing 4 of 4 results
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FileSet
DSR772NPS
released
Embeddings file set
: This single-cell dataset is comprised of Healthy Reference: biopsy samples from the Human Cell Atlas participants, CKD: biopsy samples from the KPMP Main Study protocol participants, and AKI: biopsy samples from the KPMP Main Study protocol participants.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP