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Citing CMDGA
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Embeddings type
4
Gene expression
2
Accessible chromatin
Embeddings Category
6
umap
Underlying Assay
31
10X scRNA-seq
27
Smart-seq
4
10X snATAC-seq
4
10X snRNA-seq
2
sciATAC-seq
1
10X scATAC-seq
Available data
6
h5ad
3
mtx
3
tsv
File set status
6
released
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
2
heart
1
islet of Langerhans
1
lung
1
skeletal muscle tissue
1
tissues
Tissue term
2
heart
1
lung
1
pancreas
1
skeletal muscle tissue
1
tissues
Organ
1
heart
1
lung
1
musculature of body
1
pancreas
Life stage
1
adult
Date released
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2021
1
September, 2020
1
September, 2021
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
1
Xin Sun, UCSD
Project
4
AMP
1
ENCODE
1
LungMap
RFA
4
AMP
1
ENCODE3
1
LungMap2
tissue_term_name!
stromal cell
Showing 6 of 6 results
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FileSet
DSR549TWY
released
Embeddings file set
: Using large-scale single nuclei RNA sequencing, defined the transcriptional and cellular diversity in the normal human heart.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493VFJ
released
Embeddings file set
: Clustering of snRNA-seq gene expression profiles from 27,605 cells from human skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838CLG
released
Embeddings file set
: snATAC embedding for raw TN5 insertion counts for each promoter region and cCRE in each cell for multiple tissues
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR758NPF
released
Embeddings file set
: snRNA-seq embedding on nuclei isolated from cardiac chambers from four human donors without cardiovascular pathology
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR514DTZ
released
Embeddings file set
: snRNA-seq on non-diseased lung tissue ~30-week-old gestational age, ~3-year-old and ~30-year-old
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR322WJB
released
Embeddings file set
: Islet snATAC-seq from control samples
Lab:
Kyle Gaulton, UCSD
Project:
AMP