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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
2
total RNA-seq
1
GRO-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Target of assay
3
histone
3
histone modification
2
control
2
narrow histone mark
1
broad histone mark
1
transcription factor
Biosample type
6
in vitro differentiated cells
Life stage
3
embryonic
3
unknown
Available data
6
bam
6
fastq
4
bed narrowPeak
4
bigWig
2
bed bed3+
Platform
3
Illumina Genome Analyzer IIx
3
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
6
36
Library made from
6
DNA
Date released
3
December, 2017
3
February, 2018
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
2
isogenic
Audit category:
inconsistent control read length
assay_slims!
DNA sequencing
audit.WARNING.category!
inconsistent control read length
Showing 6 of 6 results
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Experiment
TSTSR523286
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR321198
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR993192
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR666026
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR627964
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
FOXA1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR648832
released
ChIP-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP