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Schema
Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
352
ChIP-seq
96
single cell RNA-seq
89
total RNA-seq
62
DNase-seq
ATAC-seq
8
WGBS
6
Hi-C
5
pCHi-C
5
small RNA-seq
4
RRBS
1
FAIRE-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
3
tissue
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Life stage
3
unknown
2
adult
1
embryonic
Available data
3
bed bed3+
3
bedpe bed3+
3
bigWig
3
hdf5
3
hic
Library made from
6
DNA
Date released
3
July, 2019
2
March, 2020
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
3
isogenic
2
unreplicated
1
anisogenic
assay_title!
ATAC-seq
Showing 6 of 6 results
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Experiment
DSR082IVJ
released
Hi-C
of heart right ventricle
Homo sapiens
heart right ventricle male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR900RAK
released
Hi-C
of heart left ventricle
Homo sapiens
heart left ventricle male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP