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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
2
DNase-seq
1
RRBS
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Target of assay
2
transcription factor
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
4
tissue
Organ
4
liver
Life stage
4
adult
3
child
Available data
4
bam
4
fastq
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
Platform
3
Illumina Genome Analyzer IIx
Illumina Genome Analyzer II
1
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
46
50
7
33
6
200
4
36
2
32
Mapped read length (nt)
1
36
Library made from
4
DNA
Date released
3
December, 2017
1
August, 2017
Lab
4
AMP-T2D consortium
Replication type
3
anisogenic
1
unreplicated
Audit category:
1
inconsistent control read length
assay_title!
CRISPR genome editing followed by DNA sequencing
files.platform.term_name!
Illumina Genome Analyzer II
Showing 4 of 4 results
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Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR485515
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP