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Assay category
5
3D chromatin structure
Assay
5
Hi-C
Project
3
HPAP
2
AMP
RFA
3
HPAP
2
AMP2
Experiment status
5
released
Genome assembly (visualization)
4
hg19
Organism
5
Homo sapiens
Biosample type
3
primary cell
1
cell line
1
tissue
Organ
4
pancreas
3
epithelium
1
liver
Life stage
4
adult
1
unknown
Available data
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Library made from
5
DNA
Date released
3
October, 2022
2
August, 2021
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Replication type
4
anisogenic
1
unreplicated
Audit category:
3
audit script error
assay_title!
CRISPR genome editing followed by DNA sequencing
files.file_type!
bigWig
lab.title!
AMP-T2D consortium
Showing 5 of 5 results
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Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP