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Assay category
4
DNA accessibility
Assay
381
ChIP-seq
299
total RNA-seq
128
ATAC-seq
49
pCHi-C
20
DNase-seq
11
RRBS
9
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
single cell RNA-seq
4
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
RNA microarray
1
FAIRE-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
2
AMP
2
T1D
RFA
2
AMP
2
T1D
Experiment status
4
released
Genome assembly (visualization)
1
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Organ
2
blood
2
bodily fluid
1
musculature of body
1
pancreas
Life stage
63
adult
13
child
4
unknown
2
embryonic
1
newborn
Available data
1
bed bed3+
1
txt
Library made from
4
DNA
Date released
2
January, 2021
1
August, 2022
1
May, 2022
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Replication type
3
anisogenic
1
unreplicated
Audit category:
2
audit script error
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
nerve
Showing 4 of 4 results
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Experiment
DSR260JLJ
released
Audit error
1
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR127IDO
released
Audit error
1
snATAC-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR294OVU
released
snATAC-seq
of peripheral blood mononuclear cell
Homo sapiens
peripheral blood mononuclear cell male
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR247GCT
released
snATAC-seq
of peripheral blood mononuclear cell
Homo sapiens
peripheral blood mononuclear cell male
Lab:
Kyle Gaulton, UCSD
Project:
T1D