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Schema
Citing CMDGA
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Assay category
4
DNA accessibility
Assay
120
ChIP-seq
15
total RNA-seq
10
single cell RNA-seq
4
ATAC-seq
4
WGBS
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Organ
pancreas
2
adipose tissue
2
connective tissue
1
liver
1
spleen
Life stage
4
adult
Available data
4
bam
4
bed narrowPeak
4
bigWig
4
fastq
2
bigBed narrowPeak
Platform
4
Illumina HiSeq 4000
Run type
4
paired-ended
Read length (nt)
4
100
1
50
Library insert size (nt)
1
150-250
Library made from
4
DNA
Date released
2
August, 2017
2
October, 2017
Lab
4
AMP-T2D consortium
Replication type
4
unreplicated
assay_title!
CRISPR genome editing followed by sgRNA sequencing
organ_slims!
pancreas
Showing 4 of 4 results
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Experiment
TSTSR914451
released
ATAC-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR728326
released
ATAC-seq
of spleen
Homo sapiens
spleen female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR560092
released
ATAC-seq
of subcutaneous adipose tissue
Homo sapiens
subcutaneous adipose tissue female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR622315
released
ATAC-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP