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Citing CMDGA
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Assay category
4
DNA binding
Assay
4
ChIP-seq
1
GRO-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
4
Homo sapiens
Target of assay
2
transcription factor
1
broad histone mark
1
control
1
histone
1
histone modification
Biosample type
4
in vitro differentiated cells
Organ
4
embryo
Life stage
4
unknown
Available data
4
bam
4
fastq
3
bed narrowPeak
3
bigWig
1
bed bed3+
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
15
36
4
50
Library made from
4
DNA
Date released
4
December, 2017
Lab
4
AMP-T2D consortium
Replication type
3
unreplicated
1
isogenic
Audit category:
2
inconsistent control read length
assay_title!
CRISPRi RNA-seq
Showing 4 of 4 results
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Experiment
TSTSR303983
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
PDX1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR236798
released
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR642129
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR209943
released
Audit warning
1
ChIP-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP