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Citing CMDGA
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Assay category
3
DNA binding
1
DNA accessibility
Assay
3
ChIP-seq
1
DNase-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Target of assay
1
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Biosample type
4
primary cell
Organ
4
blood vessel
4
brain
4
epithelium
4
vasculature
Life stage
4
unknown
Available data
5
bigWig
4
bam
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
fastq
2
bed bed3+
hdf5
Platform
2
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
Run type
3
single-ended
Read length (nt)
3
36
Library made from
4
DNA
Date released
3
November, 2017
1
June, 2019
Lab
4
AMP-T2D consortium
Replication type
3
isogenic
1
unreplicated
assay_title!
CRISPRi RNA-seq
files.file_type!
hdf5
Showing 4 of 4 results
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Experiment
DSR958JRF
released
DNase-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR007495
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR492951
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR138847
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP