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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
243
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
primary cell
2
tissue
1
in vitro differentiated cells
Organ
1
connective tissue
1
liver
1
pancreas
Life stage
2
unknown
1
adult
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
1
bed broadPeak
1
bigBed broadPeak
Platform
1
Illumina Genome Analyzer
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
20
1
36
Library made from
3
DNA
Date released
163
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
assay_title!
Capture-C
biosample_type!
primary cell
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Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP