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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Life stage
3
adult
2
embryonic
1
unknown
Available data
5
bam
5
bed bed3+
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
5
bigWig
3
fastq
Platform
2
Illumina HiSeq 4000
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
3
paired-ended
Read length (nt)
3
36
Library made from
6
DNA
Date released
3
November, 2018
2
June, 2019
1
August, 2017
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
anisogenic
assay_title!
GRO-seq
Showing 6 of 6 results
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Experiment
DSR059MSK
released
DNase-seq
of hepatocyte
Homo sapiens
hepatocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR762OSH
released
DNase-seq
of hepatic stellate cell
Homo sapiens
hepatic stellate cell female adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR678CGC
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR869ANN
released
DNase-seq
of liver
Homo sapiens
liver female embryo (113 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP