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Citing CMDGA
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Assay category
7
DNA accessibility
Assay
371
total RNA-seq
156
ChIP-seq
122
ATAC-seq
74
single cell RNA-seq
51
WGBS
10
snATAC-seq
9
Hi-C
7
DNase-seq
4
MeRIP-seq
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RRBS
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
7
GRCh38
5
hg19
Organism
7
Homo sapiens
Biosample type
6
tissue
1
cell line
Organ
77
kidney
36
limb
32
musculature of body
29
heart
27
brain
18
ureter
11
epithelium
8
blood vessel
8
vasculature
7
pancreas
5
connective tissue
5
liver
4
artery
3
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Life stage
7
adult
unknown
Available data
7
bam
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
7
bigWig
2
fastq
Platform
2
Illumina HiSeq 4000
1
Illumina NextSeq 500
Run type
2
paired-ended
Read length (nt)
2
36
Library made from
7
DNA
Date released
4
June, 2019
2
November, 2018
1
October, 2019
Lab
7
AMP-T2D consortium
Replication type
6
unreplicated
1
isogenic
assay_title!
GRO-seq
replicates.library.biosample.life_stage!
unknown
Showing 7 of 7 results
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Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR653JBP
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR112RFK
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR367AIT
released
DNase-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR018MFK
released
DNase-seq
of pancreas
Homo sapiens
pancreas male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR501DXR
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR195PGP
released
DNase-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP