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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
5
Hi-C
Project
5
AMP
RFA
4
AMP
1
AMP2
Experiment status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
cell line
Organ
2
blood vessel
2
epithelium
2
vasculature
2
vein
1
liver
Life stage
15
adult
5
unknown
2
embryonic
1
child
Available data
645
bam
579
bigWig
327
tsv
271
bed narrowPeak
213
fastq
98
tagAlign
79
bed bed3+
63
bigBed narrowPeak
38
bed broadPeak
37
bigBed broadPeak
11
bed bedMethyl
11
bigBed bedMethyl
5
bed bed3
5
bedpe bed3+
5
hic
4
hdf5
3
bed bedgraph
3
txt
1
vcf
Library made from
5
DNA
Date released
3
October, 2019
1
August, 2021
1
March, 2020
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
2
unreplicated
1
anisogenic
Audit category:
2
inconsistent ontology term
1
audit script error
assay_title!
snATAC-seq
Showing 5 of 5 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP