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Citing CMDGA
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Assay
962
ChIP-seq
403
total RNA-seq
167
DNase-seq
161
ATAC-seq
148
single cell RNA-seq
49
pCHi-C
21
snATAC-seq
13
Hi-C
13
WGBS
11
RRBS
10
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
8
AMP
RFA
5
AMP2
3
AMP
Experiment status
8
released
Organism
7
Homo sapiens
Biosample type
5
cell line
3
tissue
Organ
4
kidney
2
liver
1
adipose tissue
1
connective tissue
1
epithelium
Life stage
adult
7
unknown
Available data
2
tsv
Library made from
7
RNA
Date released
6
August, 2021
2
December, 2019
Lab
5
Bing Ren, UCSD
3
AMP-T2D consortium
Replication type
4
isogenic
4
unreplicated
Audit category:
2
audit script error
1
inconsistent ontology term
assay_title!
snDrop-seq
replicates.library.biosample.life_stage!
adult
Showing 8 of 8 results
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Experiment
DSR433YZO
released
Audit error
1
STARR-seq
of Synthesized DNA
Homo sapiens
Synthesized DNA
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR894OMX
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR661CGV
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR090FJR
released
STARR-seq
of HEK293T
Homo sapiens
HEK293T
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR594DXF
released
STARR-seq
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR795DZU
released
RNA microarray
of subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR479AEW
released
Audit error
1
RNA microarray
of kidney interstitium
Homo sapiens
kidney interstitium
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR187TER
released
Audit error
1
RNA microarray
of renal glomerulus
Homo sapiens
renal glomerulus
Lab:
AMP-T2D consortium
Project:
AMP