Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA accessibility
Assay
519
ChIP-seq
78
single cell RNA-seq
14
total RNA-seq
7
WGBS
4
DNase-seq
4
RRBS
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
1
connective tissue
1
liver
1
pancreas
Life stage
3
unknown
1
embryonic
Available data
47
bam
47
bed narrowPeak
47
bigBed narrowPeak
47
bigWig
44
bed broadPeak
44
bigBed broadPeak
42
bed bed3+
4
fastq
Platform
3
Illumina HiSeq 2000
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2500
Run type
3
paired-ended
2
single-ended
Read length (nt)
3
36
1
20
1
101
Library made from
4
DNA
Date released
3
August, 2017
1
November, 2018
Lab
4
AMP-T2D consortium
Replication type
unreplicated
2
anisogenic
2
isogenic
assay_title!
snDrop-seq
replication_type!
unreplicated
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP