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Citing CMDGA
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Assay category
3
DNA binding
Assay
3
ChIP-seq
2
DNase-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
2
transcription factor
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
3
tissue
Organ
3
liver
Life stage
3
adult
2
child
Available data
76
bam
70
tagAlign
46
bed narrowPeak
46
bigWig
21
fastq
3
bed bed3+
3
bigBed narrowPeak
Platform
2
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2500
Run type
3
single-ended
Read length (nt)
35
50
3
36
Mapped read length (nt)
1
36
Library made from
3
DNA
Date released
2
December, 2017
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
2
anisogenic
1
unreplicated
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
files.read_length!
50
Showing 3 of 3 results
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Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999552
released
Audit warning
1
ChIP-seq
of liver
Homo sapiens
liver male adult (32 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP