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Schema
Citing CMDGA
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Assay category
3
DNA accessibility
Assay
464
total RNA-seq
141
ChIP-seq
23
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
primary cell
2
tissue
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Life stage
2
adult
1
unknown
Available data
3
bam
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
2
fastq
Platform
1
Illumina HiSeq 2000
1
Illumina HiSeq 4000
1
Illumina NextSeq 500
Run type
2
paired-ended
Read length (nt)
2
36
Library made from
3
DNA
Date released
1
August, 2017
1
June, 2019
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
isogenic
assay_title!
whole genome sequencing assay
biosample_type!
primary cell
Showing 3 of 3 results
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Experiment
DSR256LQY
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR521KIV
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP