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Citing CMDGA
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Assay category
1
DNA methylation
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
1
GRCh38
Organism
3
Homo sapiens
Biosample type
47
primary cell
27
tissue
3
cell line
2
in vitro differentiated cells
Organ
2
epithelium
2
pancreas
1
liver
Life stage
2
unknown
1
child
Available data
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
1
bigWig
1
fastq
Platform
1
Illumina HiSeq X Ten
Run type
1
paired-ended
Read length (nt)
1
151
Library made from
3
DNA
Date released
2
August, 2021
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
isogenic
Audit category:
2
inconsistent ontology term
Showing 3 of 3 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP