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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Target of assay
4
chromatin remodeller
4
transcription factor
2
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
4
cell line
1
primary cell
Organ
4
liver
Life stage
4
child
1
unknown
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
5
fastq
Platform
4
Illumina HiSeq 2500
1
Illumina HiSeq 2000
Run type
5
paired-ended
1
single-ended
Read length (nt)
5
36
4
25
1
76
Library made from
5
DNA
Date released
4
November, 2017
November, 2018
1
August, 2017
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
4
missing controlled_by
Audit category:
51
inconsistent control read length
5
inconsistent control run_type
3
inconsistent assembly
month_released!
November, 2018
Showing 5 of 5 results
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Experiment
TSTSR369214
released
Audit not_compliant
1
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
NCOR1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR588346
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
HDAC1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR382968
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
EHMT2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR998180
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CHD4
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP