Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Target of assay
54
histone
54
histone modification
35
transcription factor
29
narrow histone mark
25
broad histone mark
6
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Biosample type
2
cell line
1
tissue
Organ
2
liver
1
pancreas
Life stage
2
child
1
unknown
Available data
3
bam
3
bigWig
3
fastq
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3+
Platform
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
1
single-ended
Read length (nt)
2
25
2
36
1
51
Library made from
3
DNA
Date released
2
November, 2017
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
2
isogenic
1
anisogenic
Audit category:
3
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
files.read_length!
38
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
Experiment
TSTSR588346
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
HDAC1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR998180
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CHD4
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR774103
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP