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Citing CMDGA
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Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
6
Homo sapiens
Target of assay
3
transcription factor
2
control
1
histone
1
histone modification
1
narrow histone mark
Biosample type
3
cell line
3
tissue
Organ
5
liver
1
pancreas
Life stage
3
child
2
unknown
1
adult
Available data
6
bam
6
fastq
5
bigWig
4
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
Platform
4
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina HiSeq 2500
Run type
6
single-ended
Read length (nt)
249
36
193
76
133
100
128
50
53
51
51
40
14
27
11
25
10
101
9
35
7
33
7
49
6
200
5
32
4
44
4
61
4
75
3
67
2
37
2
38
2
70
2
74
1
30
1
72
Library made from
6
DNA
Date released
3
November, 2017
2
August, 2017
1
October, 2018
Lab
6
AMP-T2D consortium
Replication type
3
isogenic
2
anisogenic
1
unreplicated
Audit category:
1
inconsistent control read length
Showing 6 of 6 results
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Experiment
TSTSR473FQY
released
Audit warning
1
ChIP-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (37 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR078611
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
NR2C2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR711674
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
ZNF274
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986322
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR138850
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
FOXA2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR212220
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP