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Schema
Citing CMDGA
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Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
75
transcription factor
38
control
15
histone
15
histone modification
12
broad histone mark
12
recombinant protein
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Biosample type
2
tissue
1
stem cell
Organ
2
pancreas
Life stage
2
unknown
1
adult
Available data
3
bam
3
bed narrowPeak
3
bigWig
3
fastq
1
bed bed3+
1
bigBed narrowPeak
Platform
2
Illumina HiSeq 2500
1
Illumina HiSeq 2000
Run type
3
single-ended
Read length (nt)
46
36
29
76
23
51
4
44
3
50
2
25
2
33
2
61
2
200
1
40
1
49
1
72
1
74
Library made from
3
DNA
Date released
2
August, 2017
1
December, 2017
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
isogenic
Audit category:
2
inconsistent control read length
Showing 3 of 3 results
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Experiment
TSTSR015572
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR813852
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR580423
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP