Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
1
DNA accessibility
Assay
82
total RNA-seq
3
ChIP-seq
1
DNase-seq
1
WGBS
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Target of assay
3
transcription factor
Biosample type
3
tissue
1
primary cell
Organ
3
adipose tissue
3
connective tissue
Life stage
4
unknown
Available data
4
bam
4
bigWig
4
fastq
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Platform
4
Illumina HiSeq 2000
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
8
paired-ended
4
single-ended
Read length (nt)
243
36
179
76
128
50
53
51
51
40
14
27
9
35
7
49
7
100
5
32
4
44
4
61
4
75
4
101
3
25
3
67
2
37
2
38
2
70
2
74
1
20
1
30
1
72
Library made from
4
DNA
Date released
4
August, 2017
Lab
4
AMP-T2D consortium
Replication type
3
unreplicated
1
isogenic
Audit category:
3
missing controlled_by
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
Experiment
TSTSR143230
released
Audit not_compliant
1
ChIP-seq
of white adipose tissue
Homo sapiens
white adipose tissue
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR844065
released
Audit not_compliant
1
ChIP-seq
of white adipose tissue
Homo sapiens
white adipose tissue
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR326998
released
Audit not_compliant
1
ChIP-seq
of white adipose tissue
Homo sapiens
white adipose tissue
Target:
PPARG
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP