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Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA accessibility
1
3D chromatin structure
Assay
376
ChIP-seq
136
total RNA-seq
27
single cell RNA-seq
18
ATAC-seq
4
DNase-seq
1
Hi-C
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
2
tissue
1
cell line
1
in vitro differentiated cells
1
primary cell
Organ
2
liver
1
brain
1
connective tissue
Life stage
2
embryonic
2
unknown
1
child
Available data
5
fastq
4
bam
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
bigWig
2
bed bed3+
Platform
6
Illumina HiSeq 4000
5
Illumina HiSeq 2000
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
4
paired-ended
2
single-ended
Read length (nt)
4
36
1
50
1
101
Library made from
5
DNA
Date released
2
August, 2017
2
November, 2018
1
December, 2018
Lab
5
AMP-T2D consortium
Replication type
3
isogenic
1
anisogenic
1
unreplicated
Showing 5 of 5 results
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Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR021OZY
released
DNase-seq
of brain
Homo sapiens
brain male embryo (105 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP