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Schema
Citing CMDGA
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Assay category
2
DNA accessibility
1
DNA methylation
Assay
371
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
196
tissue
77
primary cell
3
cell line
Organ
1
epithelium
1
kidney
1
liver
1
pancreas
Life stage
2
child
1
adult
Available data
3
bam
3
bigWig
2
bed narrowPeak
2
bigBed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
fastq
Platform
1
Illumina HiSeq X Ten
Run type
1
paired-ended
Read length (nt)
1
151
Library made from
3
DNA
Date released
2
October, 2019
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
files.read_length!
36
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Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP