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Assay category
1
DNA accessibility
Assay
198
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
203
tissue
48
primary cell
8
cell line
6
in vitro differentiated cells
4
stem cell
Organ
2
connective tissue
1
adipose tissue
Life stage
4
unknown
2
adult
Available data
3
bedpe bed3+
2
fastq
2
ibed
2
tsv
1
bam
1
bed broadPeak
1
bed narrowPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
bigWig
Platform
1
Illumina HiSeq 2000
1
Illumina HiSeq 4000
Run type
2
paired-ended
Read length (nt)
1
36
1
69
Library made from
6
DNA
Date released
4
March, 2020
1
August, 2017
1
August, 2018
Lab
6
AMP-T2D consortium
Replication type
3
isogenic
2
anisogenic
1
unreplicated
Audit category:
3
inconsistent ontology term
Showing 6 of 6 results
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Experiment
DSR062TSX
released
pCHi-C
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR719RES
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR535XNG
released
Audit error
1
pCHi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR382TEU
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP