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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
780
ChIP-seq
221
total RNA-seq
105
single cell RNA-seq
38
ATAC-seq
27
snATAC-seq
17
WGBS
6
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
hg19
5
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
1
in vitro differentiated cells
1
primary cell
Organ
2
brain
1
connective tissue
1
liver
1
pancreas
Life stage
3
embryonic
3
unknown
Available data
203
bam
203
bed narrowPeak
203
bigBed narrowPeak
203
bigWig
200
bed broadPeak
200
bigBed broadPeak
198
bed bed3+
6
fastq
Platform
Illumina HiSeq 4000
4
Illumina HiSeq 2000
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
4
paired-ended
3
single-ended
Read length (nt)
5
36
1
20
1
101
Library made from
6
DNA
Date released
3
August, 2017
3
November, 2018
Lab
6
AMP-T2D consortium
Replication type
2
anisogenic
2
isogenic
2
unreplicated
files.platform.term_name!
Illumina HiSeq 4000
Showing 6 of 6 results
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Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR479BAW
released
DNase-seq
of brain
Homo sapiens
brain embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR021OZY
released
DNase-seq
of brain
Homo sapiens
brain male embryo (105 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP