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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
374
ChIP-seq
122
total RNA-seq
27
single cell RNA-seq
18
ATAC-seq
3
DNase-seq
1
Hi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
in vitro differentiated cells
1
primary cell
Organ
1
brain
1
liver
Life stage
2
embryonic
1
unknown
Available data
3
bam
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
2
bed bed3+
Platform
6
Illumina HiSeq 4000
4
Illumina NextSeq 500
3
Illumina HiSeq 2000
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
2
single-ended
Read length (nt)
3
36
1
101
Library made from
3
DNA
Date released
2
November, 2018
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
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Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR021OZY
released
DNase-seq
of brain
Homo sapiens
brain male embryo (105 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP