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Assay category
3
DNA accessibility
Assay
1511
ChIP-seq
1207
total RNA-seq
328
ATAC-seq
211
single cell RNA-seq
87
RNA microarray
31
snATAC-seq
27
pCHi-C
23
WGBS
21
RRBS
19
Hi-C
7
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
1
cell line
1
primary cell
1
tissue
Organ
1
epithelium
1
kidney
1
liver
Life stage
1
adult
1
child
1
unknown
Available data
175
bam
175
bed narrowPeak
175
bigBed narrowPeak
175
bigWig
bed bed3+
173
bed broadPeak
173
bigBed broadPeak
1
fastq
Run type
paired-ended
1
single-ended
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
anisogenic
2
isogenic
1
unreplicated
files.run_type!
paired-ended
replication_type!
anisogenic
files.file_type!
bed bed3+
Showing 3 of 3 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP